Articles in peer-review journals - 2017

Almeida, A., Rosa, A.M.M., Azevedo, A.M., Prazeres, D.M.F., ”A biomolecular recognition approach for the functionalization of cellulose with gold nanoparticles”, J. Mol. Recogn. (2017) e2634. doi: 10.1002/jmr.2634


Alves, L.G, Pinheiro, P.F., Feliciano, J.R., Dâmaso, D.P., Leitão, J.H., Martins, A.M.,“Synthesis, antimicrobial activity and toxicity to nematodes of cyclam derivatives”, Int. J. Antimicrob. Agents, xx (2017) xxx-xxx. doi: 10.1016/j.ijantimicag.2017.03.002


Badenes, S.M., Fernandes, T.G., Miranda, C.C., Pusch-Klein, A., Haupt, S., Rodrigues, C.A.V., Diogo, M.M., Brüstle, O., Cabral, J.M.S., “Long-term expansion of human induced pluripotent stem cells in a microcarrier-based dynamic system”, J. Chem. Technol. Biotechnol., 92 (2017) 492–503. doi: 10.1002/jctb.5074


Bento, J.B., Franca, R.D.G., Pinheiro, T., Alves, L.C., Pinheiro, H.M., Lourenço, N.D., “Using nuclear microscopy to characterize the interaction of textile-used silver nanoparticles with a biological wastewater treatment system”, Nucl. Instr. Meth. B xx (2017) xxx-xxx. doi: 10.1016/j.nimb.2017.01.016


Bernardo, R., Cunha, D.V., Wang, C., Pereira, L., Silva, S., Salazar, S.B., Schroeder, M.S., Okamoto, M., Takahashi-Nakaguchi, A., Chibana, H., Aoyoama, T., Sá-Correia, I., Azeredo, J., Butler, G., Mira, N.P., "The CgHaa1-regulon mediates response and tolerance to acetic acid stress in the human pathogen Candida glabrata", G3: Genes, Gen. Genet., 7 (2017) 1-18. doi: 10.1534/g3.116.034660


Bras, E.J.S., Chu, V., Aires-Barros, M.R., Conde, J.P., Fernandes, P., “A microfluidic platform for physical entrapment of yeast cells with continuous production of invertase”, J. Chem. Technol. Biotechnol., 92 (2017) 334-341. doi: 10.1002/jctb.5010


Cabral, M.G., Pereira, M., Silva, Z., Iria, I., Coutinho, C., Lopes, A., Sá-Correia, I., Videira, P.A., “Using dendritic cells to evaluate how Burkholderia cenocepacia clonal isolates from a chronically infected cystic fibrosis patient subvert immune functions”, Med. Microbiol. Immunol., 206 (2017) 111–123; doi:10.1007/s00430-016-0488-4


Califano, G., Castanho, S., Soares, F., Ribeiro, L., Cox, C.J., Mata, L., Costa, R., "Molecular taxonomic profiling of bacterial communities in a gilthead seabream (Sparus aurata) hatchery", Front. Microbiol., 8 (2017) 204. doi: 10.3389/fmicb.2017.00204


Campos-Pinto, I., Espitia-Saloma, E.,  Rosa, S.A.S.L., Rito-Palomares, M., Aguilar, O., Arévalo-Rodríguez, M., Aires-Barros, M.R., Azevedo, A.M., "Integration of cell harvest with affinity-enhanced purification of monoclonal antibodies using aqueous two-phase systems with a dual tag ligand", Sep. Pur. Technol., 173 (2017) 129-134. doi: 10.1016/j.seppur.2016.09.017


Carvalho, F., Marques, M.P.C., Fernandes, P., “Sucrose hydrolysis in a bespoke capillary wall-coated microreactor”, Catalysts, 7 (2017) 42; doi: 10.3390/catal7020042


Cardoso, J.M.S., Guerreiro, S.I., Lourenço, A., Alves, M.M., Montemor, M.F., Mira, N.P., Leitão, J.H., Carvalho, M.F.N.N., “Ag(I) camphorimine complexes with antimicrobial activity towards clinically important bacteria and species of the Candida genus”, PLoS One, 12 (2017) e0177355xx. doi: 10.1371/journal.pone.0177355


Castanho, S., Califano, G., Soares, F., Costa, R., Mata, L., Pousão-Ferreira, P. , Ribeiro,  L., "The effect of live feeds bathed with the red seaweed Asparagopsis armata on the survival, growth and physiology status of Sparus aurata larvae", Fish Physiol. Biochem., xx (2017) 1-12. doi: 10.1007/s10695-017-0351-6


de Carvalho, C.C.C.R., “Whole cell biocatalysts: essential workers from Nature to the industry”, Microbiol. Biotechnol., 10 (2017) 250-263. doi: 10.1111/1751-7915.12363


de Carvalho, C.C.C.R., Caramujo, M.J., ”Carotenoids in aquatic ecosystems and aquaculture: A colorful business with implications for human health”, Front. Mar. Sci., 4 (2017) 93. doi: 10.3389/fmars.2017.00093


Franca, R.D.G., Ortigueira, J., Pinheiro, H.M., Lourenço, N.D., “Effect of SBR feeding strategy and feed composition on the stability of aerobic granular sludge in the treatment of a simulated textile wastewater”, Water Sci. Technol., xx (2017) xxx-xxx. doi: 10.2166/wst.2017.300


Gil, F.N., Bellí, G., Viegas, C.A., "The Saccharomyces cerevisiae response to stress caused by the herbicidal active substance alachlor requires the iron regulon transcription factor Aft1p", Environ. Microbiol. 19 (2017) 485–499. doi: 10.1111/1462-2920.13439


Godinho, C.P., Mira, N.P., Cabrito, T.R., Teixeira, M.C., Alasoo, K., Guerreiro, J.F., Sá-Correia, I., “Yeast response and tolerance to benzoic acid involves the Gcn4- and Stp1-regulated multidrug/multixenobiotic resistance transporter Tpo1”, Appl. Microbiol. Biotechnol., x (2017) xxx-xx; doi:10.1007/s00253-017-8277-6


Hassan, A.A., Maldonado, R.F., Santos, S.C., Di Lorenzo, F., Silipo, A., Coutinho, C.P., Cooper, V.S., Molinaro, A., Valvano, M.A., Sá-Correia, I., "Structure of O-antigen and hybrid biosynthetic locus in Burkholderia cenocepacia clonal variants recovered from a cystic fibrosis patient", Front. Microbiol., xx (2017) xxx-xxx. doi: 10.3389/fmicb.2017.01027


Henriques, S.F., Mira, N.P., Sá-Correia, I., “Genome-wide search for candidate genes for yeast robustness improvement against formic acid reveals novel susceptibility (Trk1 and positive regulators) and resistance (Haa1-regulon) determinants”, Biotechnol. Biofuels, 10 (2017) 96. doi: 10.1186/s13068-017-0781-5


Jimenez, D.E.Q., Ferreira, I.M., Yoshioka, S.A., Fonseca, L. P., Porto, A.L.M., “Silk fibroin functionalized with CuSO4 on Knoevenagel condensation under microwave radiation”, Curr. Microwave Chem. 3 (2017) xxx-xxx. doi: 10.2174/2213335603666160809121421


Karimi, E., Gonçalves, J.M:S., Reis, M., Costa, R., "Draft genome sequence of Microbacterium sp. strain Alg239_V18, an Actinobacterium retrieved from the marine sponge Spongia sp.", Genome Announc., 5 (2017) e01457-16. doi: 10.1128/genomeA.01457-16


Marques, S., Matos, C.T., Gírio, F.M., Roseiro, J.C., Santos, J.A.L., “Lactic acid production from recycled paper sludge: Process intensification by running fed-batch into a membrane-recycle bioreactor”, Biochem. Eng. J. 120 (2017) 63-72. doi: 10.1016/j.bej.2016.12.021


Mil-Homens, D., Pinto, S. N., Matos, R. G., Arraiano, C., Fialho, A. M.,  “Burkholderia cenocepacia K56-2 trimeric autotransporter adhesin BcaA binds TNFR1 and contributes to induce airway inflammation”, Cell. Microbiol., 19 (2017) e12677. doi: 10.1111/cmi.12677


Monteiro, P.T., Pais, P., Costa, C., Manna, S., Sá-Correia, I., Teixeira, M.C., "The PathoYeastract database: fan information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts", Nucleic Acids Res., 45 (2017) D597-D603. doi: 10.1093/nar/gkw817


Napoleão, P., Carmo, M.M., Pinheiro, T., "Prognostic evaluation of soluble CD40L in acute myocardial infarction: is not fancy, is science!", Ann. Transl. Med., 5 (2017) 90. doi: 10.21037/atm.2017.01.58


Palma, M., Dias, P.J., Roque, F.C., Luzia, L., Guerreiro, J.F., Sá-Correia, I., “The Zygosaccharomyces bailii transcription factor Haa1 is required for acetic acid and copper stress responses suggesting subfunctionalization of the ancestral bifunctional protein Haa1/Cup2”, BMC Genomics. 18 (2017) 75. doi: 10.1186/s12864-016-3443-2


Palma, M., Münsterkötter, M., Peça, J., Güldener, U., Sá-Correia, I., “Genome sequence of the highly weak-acid-tolerant Zygosaccharomyces bailii IST302, amenable to genetic manipulations and physiological studies”, FEMS Yeast Res., xx (2017) xxx-xxx. doi: 10.1093/femsyr/fox025


Pinto, I.F., Caneira, C.R.F., Soares, R.R.G., Madaboosi, N., Aires-Barros, M.R., Conde, J.P., Azevedo, A.M., Chu, V., "The application of microbeads to microfluidic systems for enhanced detection and purification of biomolecules", Methods 116 (2017) 112–124. doi: 10.1016/j.ymeth.2016.12.005


Pires, V.M.R., Pereira, P.M.P., Brás, J.A., Correia, M., Cardoso, V., Bule, P., Alves, V.D., Najmudin, S., Venditto, I., Ferreira, L.M.A., Romão, M.J., Carvalho, A.L., Fontes, C.M.G.A., Prazeres, D.M.F., “Stability and ligand promiscuity of type A carbohydrate-binding modules are illustrated by the structure of StCBM64C from Spirochaeta thermophila”, J. Biol. Chem. 292 (2017) 4847-4860. doi: 10.1074/jbc.M116.767541


Pisoeiro, J., Galvão, A., Pinheiro, H.M., Ferreira, F., Matos, J., "Determining stoichiometric parameters of detached biomass from a HSSF-CW using respirometry", Ecological Eng., 98 (2017) Determining stoichiometric parameters of detached biomass from a HSSF-CW using respirometry. doi: 10.1016/j.ecoleng.2016.07.003


Raposo, R.S., Almeida, M.C.M.D.,  Oliveira, M.C.M.A, Fonseca, M.M., Cesário, M. T., "A Burkholderia sacchari cell factory: production of poly-3-hydroxybutyrate, xylitol and xylonic acid from xylose-rich sugar mixtures", New Biotechnol., 34 (2017) 12-22. doi: 10.1016/j.nbt.2016.10.001


Rauta, P.R., Nayak, B., Monteiro, G.A., Mateus, M., “Design and characterization of plasmids encoding antigenic peptides of Aha1 from Aeromonas hydrophila as prospective fish vaccines”, J. Biotechnol., 241 (2017) 116–126. doi: 10.1016/j.jbiotec.2016.11.019


Ribeiro, A.C., Rocha, A., Soares, R.M.D., Fonseca, l.P., Silveira, N.P., "Synthesis and characterization of acetylated amylose and development of inclusion complexes with rifampicin", Carbohyd. Polym., 157 (2017) 267-274. doi: 10.1016/j.carbpol.2016.09.064


Ribeiro, N., Roy, S., Butenko, N., Cavaco, I., Pinheiro, T., Alho, I., Marques, F., Avecilla, F., Pessoa, J.C., Correia, I., "New Cu(II) complexes with pyrazolyl derived Schiff base ligands: Synthesis and biological evaluation", J. Inorg. Biochem., xx (2017) xxx-xxx. doi: 10.1016/j.jinorgbio.2017.05.011


Rodrigues, C.J.C., Pereira, R.F.S., Fernandes, P., Cabral, J.M.S., de Carvalho, C.C.C.R., ”Cultivation-based strategies to find efficient marine biocatalysts”, Biotechnol. J., 12 (2017) 1700036. doi: 10.1002/biot.201700036


Rodrigues, G.M.C., Gaj, T., Adil, M.M., Wahba, J., Rao, A.T., Lorbeer, F.K., Kulkarni, R.U., Diogo, M.M., Cabral, J.M.S., Miller, E.W., “Defined and scalable differentiation of human oligodendrocyte precursors from pluripotent stem cells in a 3D culture system”, Stem Cell Rep., xx (2017) xxx-xxx. doi: 10.1016/j.stemcr.2017.04.027


Rodrigues, P., Silvestre, J.D., Flores-Colen, I., Viegas, C.A., Brito, J., Kurad, R., Demertzi, M., "Methodology for the assessment of the ecotoxicological potential of construction materials", Materials, 10 (2017) 649. doi:10.3390/ma10060649


Rosa, A.M.M., Prazeres, D.M.F., Paulo, P. M. R., ”Fluorescence Correlation Spectroscopy study of the complexation of DNA hybrids, IgG antibody and a chimeric protein of IgG-binding ZZ domains fused with a Carbohydrate Binding Module”, Phys. Chem. Chem. Phys., xx (2017) xxx-xxx. doi: 10.1039/C7CP00662D


Sanches, S., C. Nunes, P.C. Passarinho, F.C. Ferreira, V.J. Pereira, J.G. Crespo, "Development of photocatalytic titanium dioxide membranes for degradation of recalcitrant compounds", J. Chem. Technol. Biotechnol., 92 (2017) 1727-17-37. doi:10.1002/jctb.5172


Santos, D.A., Oliveira, M.M., Curvelo, A.A.S., Fonseca, L.P., Porto, A.L.M., "Hydrolysis of cellulose from sugarcane bagasse by cellulases from marine-derived fungi strains", Int. Biodeter. Biodegr., 121 (2017) 66-78. doi: 10.1016/j.ibiod.2017.03.014


Santos, R., Costa, C., Mil-Homens, D., Romão, D., de Carvalho, C.C.R., Pais, P., Mira, N.P., Fialho, AM, Teixeira MC, "The multidrug resistance transporters CgTpo1_1 and CgTpo1_2 play a role in virulence and biofilm formation in the human pathogen Candida glabrata", Cell. Microbiol., 19 (2016) e12686. doi: 10.1111/cmi.12686


Silva, D.F.C., Azevedo, A.M., Fernandes, P., Chu,  V., Conde, J.P., Aires-Barros, M.R., "Determination of partition coefficients of biomolecules in a microfluidic aqueous two phase system platform using fluorescence microscopy”, J. Chrom. A., 1487 (2017) 242-247. doi: 10.1016/j.chroma.2016.12.036


Silva, I.N., Duarte, S., Moreira, L.M., Monteiro, G.A., “Draft genome sequence of the plasmid-free Lactococcus lactis subsp. lactis strain LMG 19460”, Genome Announc., 4 (2017) e00210-17. doi: 10.1128/genomeA.00210-17


Silva-Santos, A.R., Alves, C.P., Prazeres, D.M.F., Azevedo, A.M., “A Process for supercoiled plasmid DNA purification based on multimodal chromatography”, Sep. Pur. Technol., 182 (2017) 94-100. doi: 10.1016/j.seppur.2017.03.042


Simões, I.N., Vale, P., Soker, S.,  Atala, A., Keller, D., Noiva, R., Carvalho, S., Peleteiro, C., Cabral, J.M.S., Eberli, D., da Silva, C.L., Baptista, P.M., "Decellularization of whole urethras for tissue engineering applications", Scientific Reports, 7 (2017) 41934. doi:10.1038/srep41934


Soares, R.R.G., Santos, D.R., Chu, V., Azevedo, A.M., Aires-Barros, M.R., Conde, J.P., "A point-of-use microfluidic device with integrated photodetector array for immunoassay multiplexing: Detection of a panel of mycotoxins in multiple samples", Biosens. Bioelectron., 87 (2017) 823-831. doi: 10.1016/j.bios.2016.09.041


Soure, A. M., Fernandes-Platzgummer, A., Moreira, F., Lilaia, C., S.-H.,  Ku, C.-P., Huang, Y.-F., Milligan, W., Cabral, J. M. S., Silva, C. L., “Integrated culture platform based on a human platelet lysate supplement for the isolation and scalable manufacturing of umbilical cord matrix-derived mesenchymal stem/stromal cells”, J. Tissue Eng. Regen. Med., 11 (2017) 1630-1640. doi: 10.1002/ter m.2200


Sousa, S.A., Feliciano, J.R., Pita, T., Guerreiro, S.I., Leitão, J.H.” Burkholderia cepacia complex virulence gene expression regulation: a review”. Genes 8 (2017) 43. doi: 10.3390/genes8010043


Swinnen, S., Henriques, S.F., Shrestha, R., Ho, P.-W., Sá‑Correia, I., Nevoigt, E., “Improvement of yeast tolerance to acetic acid through Haa1 transcription factor engineering: towards the underlying mechanisms”, Microb. Cell Fact. , 16 (2017) 7. doi: 10.1186/s12934-016-0621-5


Vasco, M.S., Alves, L.C., Corregidor, V., Bettiol, A., Watt, F., Pinheiro, T., “3D map distribution of metallic nanoparticles in whole cells using MeV ion microscopy”, J. Microsc., xx (2017) xxx-xxx. doi: 10.1111/jmi.12561


Vicente, A.I., Esteves, T., Afonso, C.A.M., Ferreira, F.C., "Solvent compatible polymer functionalization with adenine, a DNA base, for API degenotoxification: Preparation and characterization", Sep. Pur. Technol., 179 (2017) 438-448. doi: 10.1016/j.seppur.2017.02.011


Weiss, A., Costa, R., Wichard, T., “Morphogenesis of Ulva mutabilis (Chlorophyta) induced by Maribacter species (Bacteroidetes, Flavobacteriaceae)”, Botanica Marina, 60 (2017) 197–206. doi: 10.1515/bot-2016-0083.


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